PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000539.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 308aa MW: 35629.3 Da PI: 4.8375

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000539.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	57.2	5.9e-18	5	132	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratk..sgyW 83 G rF+P+d el++ L+ v g ++ + i++ d+y k ePw++ + + +ek+ yfF+k ++k++ +g+r r++ g+W Itr_sc000539.1_g00013.1 5 IGDRFQPKDYELLTILLRF-VIGMGCHR-TNIRHEDLYgKKEPWEIF-RWDCNEKHQYFFTKLKRKSKtmKGSRIDRTVGkrPGTW 87 588********776655.55555555.469999999456*5.77778999*9988887335999999644348* PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + k k++++k +g+l g k+++ + ++ +p+ + +W+++e+ l Itr_sc000539.1_g00013.1 88 HGQDKAKPIIDKkTGALLGYKRSFLYQNKLEPE-QDRQWLLKEFYL 132 ********9867888***999877777.799****976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.81	3	157	IPR003441	NAC domain
SuperFamily	SSF101941	7.19E-20	5	157	IPR003441	NAC domain
Pfam	PF02365	1.5E-10	6	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MEKRIGDRFQ PKDYELLTIL LRFVIGMGCH RTNIRHEDLY GKKEPWEIFR WDCNEKHQYF 60 FTKLKRKSKT MKGSRIDRTV GKRPGTWHGQ DKAKPIIDKK TGALLGYKRS FLYQNKLEPE 120 QDRQWLLKEF YLNDAVTKTY PNVEHAKDFV LCRLRRKKRA GSDEPQEIKD VPVETILQIL 180 LQGSADSTAT AMENLPTIEE KIDTNPTEEG EILAPVLQES MQGENNNNNG SDDSYCCYIN 240 PTEEEILAPV LQEPVQPALH ESVQGENNNN GCDDDMDLMF DLDILFDDPE LLAIQQRLED 300 VGNYMGLT

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13708	3	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15170.1	5e-13	NAC family protein